Mercurial > repos > sanbi-uwc > data_manager_shapeit_reference

comparison data_manager/shapeit_ref.py @ 3:203133a92000 draft

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planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit 74cb5dd2b3aaed4a5b26840b451b8f2920e4b9fe-dirty
author sanbi-uwc
date Thu, 13 Sep 2018 10:03:16 -0400
parents 52f0767fe68d
children 094bd0114876
comparison
equal deleted inserted replaced
2:495439e68fca 3:203133a92000
50 value = getattr(args, column) 50 value = getattr(args, column)
51 if '\t' in value: 51 if '\t' in value:
52 exit("TAB character found in {} argument".format(column)) 52 exit("TAB character found in {} argument".format(column))
53 53
54 data_manager_dict = {} 54 data_manager_dict = {}
55 data_table_entry = dict(key=args.key, description=args.description, path=args.path, 55 data_table_entry = dict(value=args.key, description=args.description, path=args.path,
56 reference_prefix=args.reference_prefix, map_prefix=args.map_prefix) 56 reference_prefix=args.reference_prefix, map_prefix=args.map_prefix)
57 _add_data_table_entry(data_manager_dict, 'shapeit_ref', data_table_entry) 57 _add_data_table_entry(data_manager_dict, 'shapeit_ref', data_table_entry)
58 58
59 args.output_file.write(json.dumps(data_manager_dict, sort_keys=True) + '\n') 59 args.output_file.write(json.dumps(data_manager_dict, sort_keys=True) + '\n')