Mercurial > repos > sanbi-uwc > data_manager_shapeit_reference

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planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit 58664d1dbd0725423a50869ecb376f05e59b6449-dirty
author sanbi-uwc
date Mon, 17 Sep 2018 16:02:36 -0400
parents 78ec8f452966
children
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7
78ec8f452966 planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit c9772b96ea77a4daac91b5fc87643972a1d71eda-dirty
sanbi-uwc
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1 {
78ec8f452966 planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit c9772b96ea77a4daac91b5fc87643972a1d71eda-dirty
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2 "cells": [
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3 {
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4 "cell_type": "code",
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5 "execution_count": 1,
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6 "metadata": {},
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7 "outputs": [],
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8 "source": [
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9 "from bioblend import toolshed"
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10 ]
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11 },
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12 {
78ec8f452966 planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit c9772b96ea77a4daac91b5fc87643972a1d71eda-dirty
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13 "cell_type": "code",
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14 "execution_count": 5,
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15 "metadata": {},
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16 "outputs": [],
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17 "source": [
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18 "ts = toolshed.ToolShedInstance(url='https://testtoolshed.g2.bx.psu.edu', key='49ad6deed569af1c011647e3911b9ea7')\n",
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19 "all_repos = ts.repositories.get_repositories()"
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20 ]
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21 },
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22 {
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23 "cell_type": "code",
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24 "execution_count": 10,
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25 "metadata": {},
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26 "outputs": [
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27 {
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28 "data": {
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29 "text/plain": [
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30 "[{'category_ids': ['83f763caf629aa54'],\n",
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31 " 'deleted': False,\n",
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32 " 'deprecated': False,\n",
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33 " 'description': 'Add path for SHAPEIT reference data to shapeit_ref table',\n",
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34 " 'homepage_url': '',\n",
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35 " 'id': '59c15cd8db07b838',\n",
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36 " 'model_class': 'Repository',\n",
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37 " 'name': 'data_manager_shapeit_reference',\n",
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38 " 'owner': 'sanbi-uwc',\n",
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39 " 'private': False,\n",
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40 " 'remote_repository_url': 'https://github.com/pvanheus/data_manager_shapeit_reference',\n",
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41 " 'times_downloaded': 22,\n",
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42 " 'type': 'unrestricted',\n",
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43 " 'user_id': '25a703560f0040ae'}]"
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44 ]
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45 },
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46 "execution_count": 10,
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47 "metadata": {},
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48 "output_type": "execute_result"
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49 }
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50 ],
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51 "source": [
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52 "[ repo for repo in all_repos if repo['owner'] == 'sanbi-uwc' and repo['name'] == 'data_manager_shapeit_reference' ]"
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53 ]
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54 },
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55 {
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56 "cell_type": "code",
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57 "execution_count": 12,
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58 "metadata": {},
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59 "outputs": [],
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60 "source": [
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61 "all_revisions = ts.repositories.repository_revisions() "
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62 ]
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63 },
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64 {
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65 "cell_type": "code",
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66 "execution_count": 14,
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67 "metadata": {},
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68 "outputs": [
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69 {
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70 "data": {
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71 "text/plain": [
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72 "[{'changeset_revision': '6b54dcb42cd5',\n",
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73 " 'downloadable': False,\n",
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74 " 'has_repository_dependencies': False,\n",
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75 " 'id': 'c85f89a2a97b5743',\n",
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76 " 'includes_datatypes': False,\n",
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77 " 'includes_tool_dependencies': False,\n",
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78 " 'includes_tools': False,\n",
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79 " 'includes_tools_for_display_in_tool_panel': False,\n",
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80 " 'includes_workflows': False,\n",
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81 " 'malicious': False,\n",
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82 " 'missing_test_components': False,\n",
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83 " 'model_class': 'RepositoryMetadata',\n",
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84 " 'repository_id': '59c15cd8db07b838',\n",
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85 " 'url': '/api/repository_revisions/c85f89a2a97b5743'},\n",
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86 " {'changeset_revision': 'f0c7cab2f547',\n",
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87 " 'downloadable': False,\n",
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88 " 'has_repository_dependencies': False,\n",
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89 " 'id': '35de89a3905a4173',\n",
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90 " 'includes_datatypes': False,\n",
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91 " 'includes_tool_dependencies': False,\n",
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sanbi-uwc
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92 " 'includes_tools': False,\n",
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93 " 'includes_tools_for_display_in_tool_panel': False,\n",
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94 " 'includes_workflows': False,\n",
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95 " 'malicious': False,\n",
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96 " 'missing_test_components': False,\n",
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97 " 'model_class': 'RepositoryMetadata',\n",
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98 " 'repository_id': '59c15cd8db07b838',\n",
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99 " 'url': '/api/repository_revisions/35de89a3905a4173'},\n",
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100 " {'changeset_revision': '52f0767fe68d',\n",
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101 " 'downloadable': True,\n",
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102 " 'has_repository_dependencies': False,\n",
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103 " 'id': '778b955f13aeb7f7',\n",
78ec8f452966 planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit c9772b96ea77a4daac91b5fc87643972a1d71eda-dirty
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104 " 'includes_datatypes': False,\n",
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105 " 'includes_tool_dependencies': False,\n",
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106 " 'includes_tools': True,\n",
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107 " 'includes_tools_for_display_in_tool_panel': False,\n",
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108 " 'includes_workflows': False,\n",
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109 " 'malicious': False,\n",
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110 " 'missing_test_components': False,\n",
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111 " 'model_class': 'RepositoryMetadata',\n",
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112 " 'repository_id': '59c15cd8db07b838',\n",
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113 " 'url': '/api/repository_revisions/778b955f13aeb7f7'},\n",
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114 " {'changeset_revision': 'f86c65c60056',\n",
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115 " 'downloadable': True,\n",
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116 " 'has_repository_dependencies': False,\n",
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117 " 'id': '32de50d3c34e66d3',\n",
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118 " 'includes_datatypes': False,\n",
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119 " 'includes_tool_dependencies': False,\n",
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120 " 'includes_tools': True,\n",
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121 " 'includes_tools_for_display_in_tool_panel': False,\n",
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122 " 'includes_workflows': False,\n",
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123 " 'malicious': False,\n",
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124 " 'missing_test_components': False,\n",
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125 " 'model_class': 'RepositoryMetadata',\n",
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126 " 'repository_id': '59c15cd8db07b838',\n",
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127 " 'url': '/api/repository_revisions/32de50d3c34e66d3'},\n",
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128 " {'changeset_revision': '495439e68fca',\n",
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129 " 'downloadable': True,\n",
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130 " 'has_repository_dependencies': False,\n",
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131 " 'id': '6ac625afb8ce0ebd',\n",
78ec8f452966 planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit c9772b96ea77a4daac91b5fc87643972a1d71eda-dirty
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132 " 'includes_datatypes': False,\n",
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133 " 'includes_tool_dependencies': False,\n",
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134 " 'includes_tools': True,\n",
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135 " 'includes_tools_for_display_in_tool_panel': False,\n",
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136 " 'includes_workflows': False,\n",
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137 " 'malicious': False,\n",
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138 " 'missing_test_components': False,\n",
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139 " 'model_class': 'RepositoryMetadata',\n",
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140 " 'repository_id': '59c15cd8db07b838',\n",
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141 " 'url': '/api/repository_revisions/6ac625afb8ce0ebd'},\n",
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142 " {'changeset_revision': '203133a92000',\n",
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143 " 'downloadable': True,\n",
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144 " 'has_repository_dependencies': False,\n",
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145 " 'id': 'eed087cca5ea50c4',\n",
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146 " 'includes_datatypes': False,\n",
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147 " 'includes_tool_dependencies': False,\n",
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148 " 'includes_tools': True,\n",
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149 " 'includes_tools_for_display_in_tool_panel': False,\n",
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150 " 'includes_workflows': False,\n",
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151 " 'malicious': False,\n",
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152 " 'missing_test_components': False,\n",
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153 " 'model_class': 'RepositoryMetadata',\n",
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154 " 'repository_id': '59c15cd8db07b838',\n",
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155 " 'url': '/api/repository_revisions/eed087cca5ea50c4'}]"
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156 ]
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157 },
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158 "execution_count": 14,
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159 "metadata": {},
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160 "output_type": "execute_result"
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161 }
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162 ],
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163 "source": [
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164 "[ revision for revision in all_revisions if revision['repository_id'] == '59c15cd8db07b838' ]"
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165 ]
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166 },
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167 {
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168 "cell_type": "code",
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169 "execution_count": null,
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170 "metadata": {},
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171 "outputs": [],
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172 "source": []
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173 }
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174 ],
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175 "metadata": {
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176 "kernelspec": {
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177 "display_name": "Python [Root]",
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178 "language": "python",
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179 "name": "Python [Root]"
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180 },
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181 "language_info": {
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182 "codemirror_mode": {
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183 "name": "ipython",
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184 "version": 3
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185 },
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186 "file_extension": ".py",
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187 "mimetype": "text/x-python",
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188 "name": "python",
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189 "nbconvert_exporter": "python",
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190 "pygments_lexer": "ipython3",
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191 "version": "3.5.4"
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192 }
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193 },
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194 "nbformat": 4,
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195 "nbformat_minor": 2
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196 }