# HG changeset patch
# User sanbi-uwc
# Date 1455191781 18000
# Node ID 56686a746b911c39dcfb47c3a26d72d94b3f43a3
# Parent  0ff626afce842d80f981a86f21559aeace995fc3
planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit dc358455cd2140328ddbb9f8f2e221f8121c6b7b

diff -r 0ff626afce84 -r 56686a746b91 data_manager/rnastar_index_builder.py
--- a/data_manager/rnastar_index_builder.py	Wed Feb 10 08:29:45 2016 -0500
+++ b/data_manager/rnastar_index_builder.py	Thu Feb 11 06:56:21 2016 -0500
@@ -56,7 +56,7 @@
 parser.add_argument('--fasta_filename')
 parser.add_argument('--fasta_dbkey')
 parser.add_argument('--fasta_description', default=None)
-parser.add_argument('--data_table_name', default='rnastar_indexes')
+parser.add_argument('--data_table_name', default='rnastar_index')
 args = parser.parse_args()
 
 filename = args.output_filename
diff -r 0ff626afce84 -r 56686a746b91 data_manager/rnastar_index_builder.xml
--- a/data_manager/rnastar_index_builder.xml	Wed Feb 10 08:29:45 2016 -0500
+++ b/data_manager/rnastar_index_builder.xml	Thu Feb 11 06:56:21 2016 -0500
@@ -4,7 +4,7 @@
     <requirements>
         <requirement type="package" version="2.4.0d">rnastar</requirement>
     </requirements>
-    <command interpreter="python">rnastar_index_builder.py "${out_file}" --fasta_filename "${input1.fields.path}" --fasta_dbkey "${input1.fields.dbkey}" --fasta_description "${input1.fields.name}" --data_table_name "rnastar_indexes"</command>
+    <command interpreter="python">rnastar_index_builder.py "${out_file}" --fasta_filename "${input1.fields.path}" --fasta_dbkey "${input1.fields.dbkey}" --fasta_description "${input1.fields.name}" --data_table_name "rnastar_index"</command>
     <inputs>
         <param name="input1" type="select" label="Genome to index(FASTA format)">
             <options from_data_table="all_fasta"/>
diff -r 0ff626afce84 -r 56686a746b91 data_manager_conf.xml
--- a/data_manager_conf.xml	Wed Feb 10 08:29:45 2016 -0500
+++ b/data_manager_conf.xml	Thu Feb 11 06:56:21 2016 -0500
@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="utf-8" ?>
 <data_managers>
     <data_manager tool_file="data_manager/rnastar_index_builder.xml" id="rnastar_index_builder" version="0.0.1">
-        <data_table name="rnastar_indexes">
+        <data_table name="rnastar_index">
             <output>
                 <column name="value" />
                 <column name="dbkey" />
diff -r 0ff626afce84 -r 56686a746b91 tool-data/rnastar_index.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/rnastar_index.loc.sample	Thu Feb 11 06:56:21 2016 -0500
@@ -0,0 +1,2 @@
+#TODO: Document
+#<unique_build_id>  <dbkey> <display_name>  <directory_path>
diff -r 0ff626afce84 -r 56686a746b91 tool-data/rnastar_indexes.loc.sample
--- a/tool-data/rnastar_indexes.loc.sample	Wed Feb 10 08:29:45 2016 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,2 +0,0 @@
-#TODO: Document
-#<unique_build_id>  <dbkey> <display_name>  <directory_path>
diff -r 0ff626afce84 -r 56686a746b91 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Wed Feb 10 08:29:45 2016 -0500
+++ b/tool_data_table_conf.xml.sample	Thu Feb 11 06:56:21 2016 -0500
@@ -1,6 +1,6 @@
 <tables>
-    <table name="rnastar_indexes.loc" comment_char="#">
+    <table name="rnastar_index" comment_char="#">
         <columns>value, dbkey, name, path</columns>
-        <file path="tool-data/rnastar_indexes.loc" />
+        <file path="tool-data/rnastar_index.loc" />
     </table>
 </tables>