Mercurial > repos > sanbi-uwc > data_manager_rnastar_index_builder

view data_manager_conf.xml @ 13:e905fcc6fd15 draft

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planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 4c88ff739e2fb47369e5256151eb55cc5cb47c9d
author sanbi-uwc
date Tue, 16 Feb 2016 02:11:37 -0500
parents 6096741e8d83
children
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<?xml version="1.0" encoding="utf-8" ?>
<data_managers>
    <data_manager tool_file="data_manager/rnastar_index_builder.xml" id="rnastar_index_builder" version="0.0.1">
        <data_table name="rnastar_index">
            <output>
                <column name="value" />
                <column name="dbkey" />
                <column name="path" output_ref="out_file">
                    <move type="directory" relative_symlinks="True">
                        <!-- no need to set source, gets taken from out_dir.extra_files_path -->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index/${value}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/{$dbkey}/rnastar_index/${value}/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>