Mercurial > repos > sanbi-uwc > data_manager_rnastar_index_builder

diff data_manager/rnastar_index_builder.py @ 13:e905fcc6fd15 draft

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planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 4c88ff739e2fb47369e5256151eb55cc5cb47c9d
author sanbi-uwc
date Tue, 16 Feb 2016 02:11:37 -0500
parents a42dbab7917c
children 70316134a316
line wrap: on
line diff
--- a/data_manager/rnastar_index_builder.py	Mon Feb 15 06:55:55 2016 -0500
+++ b/data_manager/rnastar_index_builder.py	Tue Feb 16 02:11:37 2016 -0500
@@ -36,12 +36,12 @@
     else:
         nslots = 1
 
-    cmdline_str = 'STAR --runMode genomeGenerate --genomeDir {} --genomeFastaFiles {} --runThreadsN {}'.format(
+    cmdline_str = 'STAR --runMode genomeGenerate --genomeDir {} --genomeFastaFiles {} --runThreadN {}'.format(
         output_directory,
         fasta_filename,
         nslots)
     cmdline = shlex.split(cmdline_str)
-    # cmdline = ('touch', '{}/foo'.format(output_directory))
+    #cmdline = ('touch', '{}/foo'.format(output_directory))
     try:
         check_call(cmdline)
     except CalledProcessError: