Mercurial > repos > sanbi-uwc > data_manager_rnastar_index_builder
comparison data_manager/rnastar_index_builder.xml @ 4:9d6c9d4bc794 draft
planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 8a1bc55e1e7846fb7c1cbcef441369cd7f582558
| author | sanbi-uwc |
|---|---|
| date | Wed, 10 Feb 2016 02:26:15 -0500 |
| parents | d00829775046 |
| children | 819e34a14f18 |
comparison
equal
deleted
inserted
replaced
| 3:d00829775046 | 4:9d6c9d4bc794 |
|---|---|
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="2.4.0d">rnastar</requirement> | 5 <requirement type="package" version="2.4.0d">rnastar</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <command interpreter="python">rnastar_index_builder.py "${out_file}" --fasta_filename "${input1.fields.path}" --fasta_dbkey "${input1.fields.dbkey}" --fasta_description "${input1.fields.name}" --data_table_name "rnastar_indexes"</command> | 7 <command interpreter="python">rnastar_index_builder.py "${out_file}" --fasta_filename "${input1.fields.path}" --fasta_dbkey "${input1.fields.dbkey}" --fasta_description "${input1.fields.name}" --data_table_name "rnastar_indexes"</command> |
| 8 <inputs> | 8 <inputs> |
| 9 <param name="input1" type="data" format="fasta" label="Genome to index(FASTA format)"> | 9 <param name="input1" type="select" label="Genome to index(FASTA format)"> |
| 10 <option from_data_table="all_fasta"/> | 10 <option from_data_table="all_fasta"/> |
| 11 </param> | 11 </param> |
| 12 <param type="text" name="sequence_name" value="" label="Name of sequence" /> | 12 <param type="text" name="sequence_name" value="" label="Name of sequence" /> |
| 13 <param type="text" name="sequence_id" value="" label="ID for sequence" /> | 13 <param type="text" name="sequence_id" value="" label="ID for sequence" /> |
| 14 <!--<conditional name="advanced_options">--> | 14 <!--<conditional name="advanced_options">--> |