Mercurial > repos > sanbi-uwc > data_manager_rnastar_index_builder

comparison data_manager/rnastar_index_builder.xml @ 1:316b24a15236 draft

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planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
author sanbi-uwc
date Mon, 08 Feb 2016 03:24:18 -0500
parents 2883a3b7dc56
children d00829775046
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0:2883a3b7dc56 1:316b24a15236
9 <param name="input1" type="data" format="fasta" label="Genome to index(FASTA format)"> 9 <param name="input1" type="data" format="fasta" label="Genome to index(FASTA format)">
10 <option from_data_table="all_fasta"/> 10 <option from_data_table="all_fasta"/>
11 </param> 11 </param>
12 <param type="text" name="sequence_name" value="" label="Name of sequence" /> 12 <param type="text" name="sequence_name" value="" label="Name of sequence" />
13 <param type="text" name="sequence_id" value="" label="ID for sequence" /> 13 <param type="text" name="sequence_id" value="" label="ID for sequence" />
14 <conditional name="advanced_options"> 14 <!--<conditional name="advanced_options">-->
15 <param name="show_advanced_options" type="boolean" label="Show advanced options?" 15 <!--<param name="show_advanced_options" type="boolean" label="Show advanced options?"-->
16 truevalue="yes" falsevalue="no" checked="false" /> 16 <!--truevalue="yes" falsevalue="no" checked="false" />-->
17 <when value="yes"> 17 <!--<when value="yes">-->
18 <param name="chr_bin_nbits" type="integer" label="Scale of chromosome bins" 18 <!--<param name="chr_bin_nbits" type="integer" label="Scale of chromosome bins"-->
19 help="value is log2(chrBin), where chrBin is the size of the bins for genome storage: each chromosome will occupy an integer number of bins" default="18" /> 19 <!--help="value is log2(chrBin), where chrBin is the size of the bins for genome storage: each chromosome will occupy an integer number of bins" default="18" />-->
20 </when> 20 <!--</when>-->
21 <when value="no" /> 21 <!--<when value="no" />-->
22 </conditional> 22 <!--</conditional>-->
23 </inputs> 23 </inputs>
24 <outputs> 24 <outputs>
25 <!-- <data from_work_dir="tempstargenomedir" auto_format="false"></data>--> 25 <!-- <data from_work_dir="tempstargenomedir" auto_format="false"></data>-->
26 <data name="out_file" format="data_manager_json" /> 26 <data name="out_file" format="data_manager_json" />
27 </outputs> 27 </outputs>