# HG changeset patch
# User sanbi-uwc
# Date 1587545565 0
# Node ID 730e8bf0763dea8c4a7377a7f571fd33a661786b
# Parent  e5552d150dafb8fd9159b2bd22bc810206abbaf9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit ec88f278d061a0ed14b92e0563d276a30fb04b71-dirty"

diff -r e5552d150daf -r 730e8bf0763d data_manager/install_primer_scheme_bedfiles.py
--- a/data_manager/install_primer_scheme_bedfiles.py	Sat Apr 18 16:37:22 2020 +0000
+++ b/data_manager/install_primer_scheme_bedfiles.py	Wed Apr 22 08:52:45 2020 +0000
@@ -17,9 +17,9 @@
 
 def fetch_artic_primers(output_directory, primers):
     primer_sets = {
-        "ARTICv1": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V1/nCoV-2019.bed",
-        "ARTICv2": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V2/nCoV-2019.bed",
-        "ARTICv3": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V3/nCoV-2019.bed",
+        "SARS-CoV-2-ARTICv1": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V1/nCoV-2019.bed",
+        "SARS-CoV-2-ARTICv2": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V2/nCoV-2019.bed",
+        "SARS-CoV-2-ARTICv3": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V3/nCoV-2019.bed",
     }
 
     data = []
diff -r e5552d150daf -r 730e8bf0763d data_manager/install_primer_scheme_bedfiles.xml
--- a/data_manager/install_primer_scheme_bedfiles.xml	Sat Apr 18 16:37:22 2020 +0000
+++ b/data_manager/install_primer_scheme_bedfiles.xml	Wed Apr 22 08:52:45 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.8" tool_type="manage_data" profile="19.05">
+<tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.9" tool_type="manage_data" profile="19.05">
     <requirements>
         <requirement type="package">python</requirement>
         <requirement type="package" version="2.22.0">requests</requirement>
@@ -61,4 +61,4 @@
             </output>        
         </test>
     </tests>
-</tool>
\ No newline at end of file
+</tool>
diff -r e5552d150daf -r 730e8bf0763d tool-data/primer_scheme_bedfiles.loc.sample
--- a/tool-data/primer_scheme_bedfiles.loc.sample	Sat Apr 18 16:37:22 2020 +0000
+++ b/tool-data/primer_scheme_bedfiles.loc.sample	Wed Apr 22 08:52:45 2020 +0000
@@ -5,4 +5,4 @@
 # value  description path
 #
 # for example
-# ARTICv1   ARTIC v1 primers    /data/galaxy/tool_data/artic_primers/ARTICv1.bed
\ No newline at end of file
+# SARS-CoV-2-ARTICv1	SARS-CoV-2 ARTIC v1 primers	/data/galaxy/tool_data/artic_primers/SARS-CoV-2-ARTICv1.bed
diff -r e5552d150daf -r 730e8bf0763d tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Sat Apr 18 16:37:22 2020 +0000
+++ b/tool_data_table_conf.xml.sample	Wed Apr 22 08:52:45 2020 +0000
@@ -1,6 +1,6 @@
 <tables>
     <!-- Locations of primer scheme BED files -->
-    <table name="primer_scheme_bedfiles" comment_char="#">
+    <table name="primer_scheme_bedfiles" comment_char="#" allow_duplicate_entries="False">
         <columns>value, description, path</columns>
         <file path="tool-data/primer_scheme_bedfiles.loc" />
     </table>