# HG changeset patch
# User sanbi-uwc
# Date 1457182506 18000
# Node ID 8dd4b25716d11548119f73a8c455814f691204a2
# Parent  b7c01f1d6451bc6ea4ce8a790ee037310c4a249e
planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 05004076adb510abc08f6c1e28ba22b2c1a29534

diff -r b7c01f1d6451 -r 8dd4b25716d1 data_manager/novocraft_index_builder.py
--- a/data_manager/novocraft_index_builder.py	Sat Mar 05 07:05:30 2016 -0500
+++ b/data_manager/novocraft_index_builder.py	Sat Mar 05 07:55:06 2016 -0500
@@ -14,7 +14,7 @@
 
 from json import loads, dumps
 
-DEFAULT_DATA_TABLE_NAME = "novocraft_indexes"
+DEFAULT_DATA_TABLE_NAME = "novocraft_index"
 
 def get_dbkey_id_name(params, dbkey_description=None):
     dbkey = params['param_dict']['dbkey']
@@ -81,7 +81,7 @@
     parser = argparse.ArgumentParser(description="Generate Novo-align genome index and JSON describing this")
     parser.add_argument('output_filename')
     parser.add_argument('--dbkey_description')
-    parser.add_argument('--data_table_name', default='novocraft_indexes')
+    parser.add_argument('--data_table_name', default='novocraft_index')
     args = parser.parse_args()
 
     filename = args.output_filename
diff -r b7c01f1d6451 -r 8dd4b25716d1 data_manager/novocraft_index_builder.xml
--- a/data_manager/novocraft_index_builder.xml	Sat Mar 05 07:05:30 2016 -0500
+++ b/data_manager/novocraft_index_builder.xml	Sat Mar 05 07:55:06 2016 -0500
@@ -6,7 +6,7 @@
         <exit_code range="1:" />
     </stdio>
     <command interpreter="python">
-        novocraft_index_builder.py "${out_file}" --dbkey_description ${ dbkey.get_display_text() } --data_table_name "novocraft_indexes"
+        novocraft_index_builder.py "${out_file}" --dbkey_description ${ dbkey.get_display_text() } --data_table_name "novocraft_index"
     </command>
     <inputs>
         <param name="dbkey" type="genomebuild" label="DBKEY to assign to data" />
diff -r b7c01f1d6451 -r 8dd4b25716d1 data_manager_conf.xml
--- a/data_manager_conf.xml	Sat Mar 05 07:05:30 2016 -0500
+++ b/data_manager_conf.xml	Sat Mar 05 07:55:06 2016 -0500
@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="utf-8" ?>
 <data_managers>
     <data_manager tool_file="data_manager/novocraft_index_builder.xml" id="novocraft_index_builder" version="0.0.1">
-        <data_table name="novocraft_indexes">
+        <data_table name="novocraft_index">
             <output>
                 <column name="value" />
                 <column name="dbkey" />
diff -r b7c01f1d6451 -r 8dd4b25716d1 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Sat Mar 05 07:05:30 2016 -0500
+++ b/tool_data_table_conf.xml.sample	Sat Mar 05 07:55:06 2016 -0500
@@ -1,5 +1,5 @@
 <tables>
-    <table name="novocraft_indexes" comment_char="#">
+    <table name="novocraft_index" comment_char="#">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/novocraft_index.nix" />
     </table>