# HG changeset patch
# User sanbi-uwc
# Date 1456749272 18000
# Node ID d8c61b89caf25b23bfd98cc16d103117e43dd6e5
# Parent  3c0e3416627550ae4087cbe542eb266f06ac790d
planemo upload for repository https://github.com/zipho/data_manager_novoalign_license_uploader commit bbe707e24f0baca8840603b0abb05bde8fa6d6a4

diff -r 3c0e34166275 -r d8c61b89caf2 data_manager/novoalign_license_uploader.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/novoalign_license_uploader.py	Mon Feb 29 07:34:32 2016 -0500
@@ -0,0 +1,28 @@
+#!/usr/bin/env 
+# Zipho Masholoigu (SANBI-UWC)
+
+import os
+import argparse
+
+import logging
+log = logging.getLogger( __name__ )
+
+LICENSE_TARGET_DIRECTORY = "novoalign"
+
+#Parse Command Line
+parser = argparse.ArgumentParser(description="Upload the nonoalign license to the tool-data path")
+parser.add_argument('--license_filename')
+parser.add_argument('--license_dir')
+
+args = parser.parse_args()
+filename = args.license_filename
+
+#create the license target directory
+target_dir = args.license_dir + "/" + LICENSE_TARGET_DIRECTORY
+license_file = target_dir+"/"+"license.lic"
+if not os.path.isfile(license_file):
+    os.mkdir( target_dir )
+    #move/copy license file to the tool-data path
+    os.rename( filename, target_dir+"/"+"license.lic")
+else:
+    log.debug("License for novoalign seems to exists already")
diff -r 3c0e34166275 -r d8c61b89caf2 data_manager/novoalign_license_uploader.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/novoalign_license_uploader.xml	Mon Feb 29 07:34:32 2016 -0500
@@ -0,0 +1,27 @@
+<?xml version="1.0" encoding="UT:F-8" ?> 
+<tool id="data_manager_novoalign_license_uploader" name="Novo-align License Uploader" version="1.0">
+    <description>Upload a license file to Galaxy tool-data directory </description>
+    <stdio>
+        <exit_code range=":-1" />
+        <exit_code range="1:" />
+    </stdio>
+    <command interpreter="python">
+        upload_novoalign_lic.py --license_filename "${in_file}" --license_dir ${GALAXY_DATA_INDEX_DIR}
+    </command>
+    <inputs>
+        <param format="data" name="in_file" type="data" label="License for the Novoalign program" />
+    </inputs>
+    <outputs>
+        <data format="tabular" name="out_file" label="Novoalign License uploader on ${in_file.name}"/>
+    </outputs>
+    <help>
+        Loading the license file for Novo-align program to the tool-data path.  
+    </help>
+    <citations>
+        <citation></citation>
+    </citations>
+    <tests>
+        <test>
+        </test>
+    </tests>
+</tool>
diff -r 3c0e34166275 -r d8c61b89caf2 data_manager/upload_novoalign_lic.py
--- a/data_manager/upload_novoalign_lic.py	Mon Feb 29 07:18:49 2016 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,28 +0,0 @@
-#!/usr/bin/env 
-# Zipho Masholoigu (SANBI-UWC)
-
-import os
-import argparse
-
-import logging
-log = logging.getLogger( __name__ )
-
-LICENSE_TARGET_DIRECTORY = "novoalign"
-
-#Parse Command Line
-parser = argparse.ArgumentParser(description="Upload the nonoalign license to the tool-data path")
-parser.add_argument('--license_filename')
-parser.add_argument('--license_dir')
-
-args = parser.parse_args()
-filename = args.license_filename
-
-#create the license target directory
-target_dir = args.license_dir + "/" + LICENSE_TARGET_DIRECTORY
-license_file = target_dir+"/"+"license.lic"
-if not os.path.isfile(license_file):
-    os.mkdir( target_dir )
-    #move/copy license file to the tool-data path
-    os.rename( filename, target_dir+"/"+"license.lic")
-else:
-    log.debug("License for novoalign seems to exists already")
diff -r 3c0e34166275 -r d8c61b89caf2 data_manager/upload_novoalign_lic.xml
--- a/data_manager/upload_novoalign_lic.xml	Mon Feb 29 07:18:49 2016 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,27 +0,0 @@
-<?xml version="1.0" encoding="UT:F-8" ?> 
-<tool id="data_manager_novoalign_license_uploader" name="Novo-align License Uploader" version="1.0">
-    <description>Upload a license file to Galaxy tool-data directory </description>
-    <stdio>
-        <exit_code range=":-1" />
-        <exit_code range="1:" />
-    </stdio>
-    <command interpreter="python">
-        upload_novoalign_lic.py --license_filename "${in_file}" --license_dir ${GALAXY_DATA_INDEX_DIR}
-    </command>
-    <inputs>
-        <param format="data" name="in_file" type="data" label="License for the Novoalign program" />
-    </inputs>
-    <outputs>
-        <data format="tabular" name="out_file" label="Novoalign License uploader on ${in_file.name}"/>
-    </outputs>
-    <help>
-        Loading the license file for Novo-align program to the tool-data path.  
-    </help>
-    <citations>
-        <citation></citation>
-    </citations>
-    <tests>
-        <test>
-        </test>
-    </tests>
-</tool>
diff -r 3c0e34166275 -r d8c61b89caf2 data_manager_conf.xml
--- a/data_manager_conf.xml	Mon Feb 29 07:18:49 2016 -0500
+++ b/data_manager_conf.xml	Mon Feb 29 07:34:32 2016 -0500
@@ -1,7 +1,6 @@
 <?xml version="1.0" encoding="utf-8" ?>
 <data_managers>
-    <data_manager tool_file="data_manager/upload_novoalign_lic.xml" id="data_manager_novoalign_license_uploader"
+    <data_manager tool_file="data_manager/novoalign_license_uploader.xml" id="novoalign_license_uploader"
                   undeclared_tables="True" version="0.0.1">
-
     </data_manager>
-</data_managers>
\ No newline at end of file
+</data_managers>