diff upload_novoalign_lic.py @ 0:0b64aa6d4214 draft

planemo upload for repository https://github.com/zipho/data_manager_novoalign_license_uploader commit fdbfeddc2f83df93d20ce1e75193bb5a8db2524a

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/upload_novoalign_lic.py	Sun Feb 28 14:51:11 2016 -0500
@@ -0,0 +1,30 @@
+#!/usr/bin/env 
+# Zipho Masholoigu (SANBI-UWC)
+
+import sys
+import os
+import tempfile
+import shutil
+import optparse
+import urllib2
+import subprocess
+
+import logging
+log = logging.getLogger( __name__ )
+
+LICENCE_TARGET_DIRECTORY = "tool-data/novoalign/"
+
+#Parse Command Line
+parser = optparse.OptionParser()
+args = parser.parse_args()
+    
+filename = args[0]
+    
+#read the contents of the license file
+license_str = open( filename ).read()
+    
+#create the licence target directory
+os.mkdir( LICENCE_TARGET_DIRECTORY )
+    
+#save info to json file
+open( filename, 'wb' ).write( license_str )