# HG changeset patch
# User sanbi-uwc
# Date 1536364072 14400
# Node ID efdead58e937be6947338208858565cc9a2b4329
# Parent  7226cda27b03bc23a2ad1bb0ff03e35ef16d56ee
planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit b682adad2c3c74567d23e1a5cf2bfcc3df1c96ae-dirty

diff -r 7226cda27b03 -r efdead58e937 data_manager/fetch_refseq.xml
--- a/data_manager/fetch_refseq.xml	Fri Sep 07 19:39:10 2018 -0400
+++ b/data_manager/fetch_refseq.xml	Fri Sep 07 19:47:52 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.7" tool_type="manage_data">
+<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.8" tool_type="manage_data">
     <description>Fetch FASTA data from NCBI RefSeq and update all_fasta data table</description>
     <requirements>
         <requirement type="package" version="3">python</requirement>
diff -r 7226cda27b03 -r efdead58e937 data_manager_conf.xml
--- a/data_manager_conf.xml	Fri Sep 07 19:39:10 2018 -0400
+++ b/data_manager_conf.xml	Fri Sep 07 19:47:52 2018 -0400
@@ -9,9 +9,9 @@
                 <column name="path" output_ref="output_file" >
                     <move type="file">
                         <source>${path}</source>
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/${dbkey}/os.path.basename(${path})</target>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/${dbkey}/${value}.fasta)</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/${dbkey}/os.path.basename(${path})</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/${dbkey}/${value}.fasta)</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>