# HG changeset patch
# User sanbi-uwc
# Date 1536391460 14400
# Node ID 1977080c99ec318228796975ed2fdc2c9619f0b7
# Parent  dd9f976e9d97ecfff074577c0c1a5dc4dd3500b6
planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit 687fed3e6ffed745baf5d6241ee82f2bd9671256-dirty

diff -r dd9f976e9d97 -r 1977080c99ec data_manager/fetch_refseq.xml
--- a/data_manager/fetch_refseq.xml	Sat Sep 08 03:08:02 2018 -0400
+++ b/data_manager/fetch_refseq.xml	Sat Sep 08 03:24:20 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.14" tool_type="manage_data">
+<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.15" tool_type="manage_data">
     <description>Fetch FASTA data from NCBI RefSeq and update all_fasta data table</description>
     <requirements>
         <requirement type="package" version="3">python</requirement>
diff -r dd9f976e9d97 -r 1977080c99ec data_manager_conf.xml
--- a/data_manager_conf.xml	Sat Sep 08 03:08:02 2018 -0400
+++ b/data_manager_conf.xml	Sat Sep 08 03:24:20 2018 -0400
@@ -10,7 +10,12 @@
                     <move type="file">
                         <source>${path}</source>
                         <target base="${GALAXY_DATA_MANAGER_DATA_PATH}"><![CDATA[
-                        #set release_num = str($dbkey).split()[1]                        
+                        #set name_parts = str($dbkey).split('.')
+                        #if len($name_parts) == 3:
+                            #set release_num = $name_parts[1]
+                        #else
+                            #set release_num = 'UNKNOWN_RELEASE'
+                        #fi                        
                         refseq/${release_num}/${value}.fasta
                         ]]></target>
                     </move>