Mercurial > repos > sanbi-uwc > data_manager_fetch_refseq

view data_manager_conf.xml @ 11:b1e8f8a613e6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit b682adad2c3c74567d23e1a5cf2bfcc3df1c96ae-dirty
author sanbi-uwc
date Fri, 07 Sep 2018 20:07:55 -0400
parents 97bf61f2fdae
children dd9f976e9d97
line wrap: on
line source

<?xml version="1.0"?>
<data_managers>    
    <data_manager tool_file="data_manager/fetch_refseq.xml" id="fetch_genome_fetch_refseq">
        <data_table name="all_fasta">
            <output>
                <column name="value" />
                <column name="dbkey" />
                <column name="name" />
                <column name="path" output_ref="output_file" >
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/${dbkey}/${value}.fasta</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/${dbkey}/${value}.fasta</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>    
</data_managers>