Mercurial > repos > sanbi-uwc > data_manager_fetch_refseq

view data_manager_conf.xml @ 18:75c1817c2ecf draft

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planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit 6c7dfb528659d4413423377eced68ca360ed1316-dirty
author sanbi-uwc
date Fri, 28 Sep 2018 23:46:24 -0400
parents 0347d4d8b436
children d118e256faca
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<?xml version="1.0"?>
<data_managers>    
    <data_manager tool_file="data_manager/fetch_refseq.xml" id="fetch_genome_fetch_refseq">
        <data_table name="all_fasta">
            <output>
                <column name="value" />
                <column name="dbkey" />
                <column name="name" />
                <column name="path" output_ref="output_file" >
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</target>
                    </move>
                    <value_translation>refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>    
</data_managers>