Mercurial > repos > sanbi-uwc > data_manager_fetch_refseq
comparison data_manager_conf.xml @ 16:d10b5e0ed486 draft
planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit 687fed3e6ffed745baf5d6241ee82f2bd9671256-dirty
| author | sanbi-uwc |
|---|---|
| date | Sat, 08 Sep 2018 04:19:52 -0400 |
| parents | 01ea53470921 |
| children | 0347d4d8b436 |
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| 15:01ea53470921 | 16:d10b5e0ed486 |
|---|---|
| 17 #set release_num = 'UNKNOWN_RELEASE' | 17 #set release_num = 'UNKNOWN_RELEASE' |
| 18 #end if | 18 #end if |
| 19 refseq/${release_num}/${value}.fasta | 19 refseq/${release_num}/${value}.fasta |
| 20 ]]></target> | 20 ]]></target> |
| 21 </move> | 21 </move> |
| 22 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/${dbkey}/${value}.fasta</value_translation> | 22 <value_translation><![CDATA[ |
| 23 #set name_parts = str($dbkey).split('.') | |
| 24 #if len($name_parts) == 3: | |
| 25 #set release_num = $name_parts[1] | |
| 26 #else | |
| 27 #set release_num = 'UNKNOWN_RELEASE' | |
| 28 #end if | |
| 29 refseq/${release_num}/${value}.fasta | |
| 30 ]]></value_translation> | |
| 23 <value_translation type="function">abspath</value_translation> | 31 <value_translation type="function">abspath</value_translation> |
| 24 </column> | 32 </column> |
| 25 </output> | 33 </output> |
| 26 </data_table> | 34 </data_table> |
| 27 </data_manager> | 35 </data_manager> |