Mercurial > repos > sanbi-uwc > data_manager_fetch_refseq
comparison data_manager/fetch_refseq.xml @ 9:7cfce83a7f62 draft
planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit b682adad2c3c74567d23e1a5cf2bfcc3df1c96ae-dirty
| author | sanbi-uwc |
|---|---|
| date | Fri, 07 Sep 2018 19:57:47 -0400 |
| parents | 97bf61f2fdae |
| children | d878e492546c |
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| 8:97bf61f2fdae | 9:7cfce83a7f62 |
|---|---|
| 1 <tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.9" tool_type="manage_data"> | 1 <tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.10" tool_type="manage_data"> |
| 2 <description>Fetch FASTA data from NCBI RefSeq and update all_fasta data table</description> | 2 <description>Fetch FASTA data from NCBI RefSeq and update all_fasta data table</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3">python</requirement> | 4 <requirement type="package" version="3">python</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="aggressive"><![CDATA[ | 6 <command detect_errors="aggressive"><![CDATA[ |
| 30 <option value="protozoa">Protozoa</option> | 30 <option value="protozoa">Protozoa</option> |
| 31 <option value="vertebrate_mammalian">Mammalian Vertebrate</option> | 31 <option value="vertebrate_mammalian">Mammalian Vertebrate</option> |
| 32 <option value="vertebrate_other">Other Vertebrate</option> | 32 <option value="vertebrate_other">Other Vertebrate</option> |
| 33 <option value="viral">Viral</option> | 33 <option value="viral">Viral</option> |
| 34 </param> | 34 </param> |
| 35 <param argument="mol_types" type="select" label="Molecule type" help="Select at least one of genomic, protein or rna sequence"> | 35 <param argument="mol_types" type="select" multiple="true" label="Molecule type" help="Select at least one of genomic, protein or rna sequence"> |
| 36 <option value="protein">Protein</option> | 36 <option value="protein">Protein</option> |
| 37 <option value="genomic">Genomic (DNA)</option> | 37 <option value="genomic">Genomic (DNA)</option> |
| 38 <option value="rna">RNA</option> | 38 <option value="rna">RNA</option> |
| 39 </param> | 39 </param> |
| 40 <conditional name="advanced"> | 40 <conditional name="advanced"> |