comparison data_manager/fetch_refseq.xml @ 1:300562c726cc draft

planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit a0125981706495e0a8be4fafe2eb1af3f0cfdaa3

0:cfe6cd521835

<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.1" tool_type="manage_data">
    <description>Fetch FASTA data from NCBI RefSeq and update all_fasta data table</description>
    <requirements>
        <requirement type="package" version="3">python</requirement>
    </requirements>
    <command detect_errors="aggressive"><![CDATA[

      #if str( $advanced.advanced_selector ) == 'advanced':
        '${advanced.compress}'
      #end if
      --galaxy_datamanager_filename '${output_file}'
      --division_names ${division_names}
      --mol_types ${mol_type}
      #if str( $pin_date ) != 'NO':
        --pin_date '${pin_date}'
      #end if
    ]]></command>
    <inputs>

1:300562c726cc

<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.2" tool_type="manage_data">
    <description>Fetch FASTA data from NCBI RefSeq and update all_fasta data table</description>
    <requirements>
        <requirement type="package" version="3">python</requirement>
    </requirements>
    <command detect_errors="aggressive"><![CDATA[

      #if str( $advanced.advanced_selector ) == 'advanced':
        '${advanced.compress}'
      #end if
      --galaxy_datamanager_filename '${output_file}'
      --division_names ${division_names}
      --mol_types ${mol_types}
      #if str( $pin_date ) != 'NO':
        --pin_date '${pin_date}'
      #end if
    ]]></command>
    <inputs>