Mercurial > repos > sanbi-uwc > data_manager_fetch_refseq
comparison data_manager_conf.xml @ 14:1977080c99ec draft
planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit 687fed3e6ffed745baf5d6241ee82f2bd9671256-dirty
| author | sanbi-uwc |
|---|---|
| date | Sat, 08 Sep 2018 03:24:20 -0400 |
| parents | dd9f976e9d97 |
| children | 01ea53470921 |
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| 13:dd9f976e9d97 | 14:1977080c99ec |
|---|---|
| 8 <column name="name" /> | 8 <column name="name" /> |
| 9 <column name="path" output_ref="output_file" > | 9 <column name="path" output_ref="output_file" > |
| 10 <move type="file"> | 10 <move type="file"> |
| 11 <source>${path}</source> | 11 <source>${path}</source> |
| 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}"><![CDATA[ | 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}"><![CDATA[ |
| 13 #set release_num = str($dbkey).split()[1] | 13 #set name_parts = str($dbkey).split('.') |
| 14 #if len($name_parts) == 3: | |
| 15 #set release_num = $name_parts[1] | |
| 16 #else | |
| 17 #set release_num = 'UNKNOWN_RELEASE' | |
| 18 #fi | |
| 14 refseq/${release_num}/${value}.fasta | 19 refseq/${release_num}/${value}.fasta |
| 15 ]]></target> | 20 ]]></target> |
| 16 </move> | 21 </move> |
| 17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/${dbkey}/${value}.fasta</value_translation> | 22 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/${dbkey}/${value}.fasta</value_translation> |
| 18 <value_translation type="function">abspath</value_translation> | 23 <value_translation type="function">abspath</value_translation> |