Mercurial > repos > sanbi-uwc > data_manager_fetch_artic_primers
view data_manager/fetch_artic_primers.xml @ 3:6114f017f819 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 120c6491f4b0888220e432693a9805d8198d7397"
author | sanbi-uwc |
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date | Fri, 17 Apr 2020 11:42:59 +0000 |
parents | 119f459fc35f |
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<tool id="fetch_artic_primers" name="ARTIC primer data manager" version="0.0.4" tool_type="manage_data" profile="19.05"> <requirements> <requirement type="package">python</requirement> <requirement type="package" version="2.22.0">requests</requirement> </requirements> <!-- fetch all the primers in one go --> <command detect_errors="exit_code"> python '$__tool_directory__/fetch_artic_primers.py' --galaxy_datamanager_filename '${output_file}' --primers '${primers}' </command> <inputs> <param name="primers" type="select" multiple="true" label="SARS-CoV-2 Primers to fetch"> <option value="ARTICv1" selected="true">ARTIC v1</option> <option value="ARTICv2" selected="true">ARTIC v2</option> <option value="ARTICv3" selected="true">ARTIC v3</option> </param> </inputs> <outputs> <data name="output_file" format="data_manager_json"/> </outputs> <tests> <test> <param name="primers" value="ARTICv1,ARTICv2,ARTICv3"/> <output name="output_file"> <assert_contents> <has_text text="ARTIC"/> </assert_contents> </output> </test> </tests> </tool>