Mercurial > repos > sanbi-uwc > confil
changeset 11:72cb19a32d8b draft
planemo upload for repository https://github.com/COMBAT-TB/confil commit 036172521321dbafe62e6d72b3a491f4bc4b9dc9-dirty
| author | sanbi-uwc |
|---|---|
| date | Fri, 08 Mar 2019 13:55:10 -0500 |
| parents | 2cde7c81c694 |
| children | 5ec97cccb3fe |
| files | confil.xml |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/confil.xml Fri Mar 08 12:46:23 2019 -0500 +++ b/confil.xml Fri Mar 08 13:55:10 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="confil" name="Contamination Filter (confil)" version="@VERSION@+galaxy3"> +<tool id="confil" name="Contamination Filter (confil)" version="@VERSION@+galaxy4"> <macros> <token name="@VERSION@">0.1.3</token> </macros> @@ -19,9 +19,9 @@ if confil --threads \${GALAXY_SLOTS:-1} --cutoff $cutoff $input_type_conditional.single_input.element_identifier ; then - ln -sf "${input_type_conditional.single_input}" '$single_output_file' + ln -sf "${input_type_conditional.single_input}" '$single_output_file' ; else - touch '$single_output_file' # failure - make empty file + touch '$single_output_file' ; fi ####### Paired Collection #elif $input_type == "paired_collection" @@ -34,9 +34,9 @@ $input_type_conditional.collection_input.forward.element_identifier $input_type_conditional.collection_input.reverse.element_identifier ; then ln -sf "${input_type_conditional.collection_input.forward}" '$list_output.forward' - && ln -sf "${input_type_conditional.collection_input.reverse}" '$list_output.reverse' + && ln -sf "${input_type_conditional.collection_input.reverse}" '$list_output.reverse' ; else - touch '$list_output.forward' && touch '$list_output.reverse' # failure - make empty files + touch '$list_output.forward' && touch '$list_output.reverse' ; fi #end if && mv $report_name '$output_report'