diff confil.egg-info/PKG-INFO @ 4:eaf51f9aff10 draft

planemo upload for repository https://github.com/COMBAT-TB/confil commit 9e5284a2616de5d869319f9c4436716a3f6656f8-dirty

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+Metadata-Version: 1.0
+Name: confil
+Version: 0.1.2.dev20190304
+Summary: Contamination filter
+Home-page: https://github.com/COMBAT-TB/confil
+Author: UNKNOWN
+Author-email: UNKNOWN
+License: UNKNOWN
+Description-Content-Type: text/markdown
+Description: # confil
+        
+        [![Build Status](https://travis-ci.org/COMBAT-TB/confil.svg?branch=master)](https://travis-ci.org/COMBAT-TB/confil)
+        [![Anaconda-Server Badge](https://anaconda.org/thoba/confil/badges/version.svg)](https://anaconda.org/thoba/confil)
+        
+        :no_entry_sign: :construction: **For in-house use**
+        
+        `confil` parses a [kraken2](https://ccb.jhu.edu/software/kraken2/) report and determines contamination based on a specified cutoff.
+        
+        ## Requirements
+        
+        - kraken2
+        
+        ## Up and running
+        
+        ```sh
+        $ git clone https://github.com/COMBAT-TB/confil.git
+        ...
+        $ cd confil
+        $ virtualenv envname
+        $ source envname/bin/activate
+        $ pip install -r requirements.txt
+        $ python setup.py install
+        $ confil --help
+        $ confil --threads 1 --paired --cutoff 80 fastq_1.fastq fastq_2.fastq
+        ```
+        
+Keywords: contamination,filter
+Platform: UNKNOWN