Mercurial > repos > sanbi-uwc > confil

diff test/test_runner.py @ 3:53a61865e86e draft

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planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
author sanbi-uwc
date Wed, 27 Feb 2019 06:20:05 -0500
parents
children 2b90d0574ea5
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test/test_runner.py	Wed Feb 27 06:20:05 2019 -0500
@@ -0,0 +1,23 @@
+import os
+
+import pytest
+from click.testing import CliRunner
+
+from confil.confil import confil
+
+CURR_DIR = os.path.dirname(os.path.abspath(__file__))
+TEST_DATA_DIR = os.path.join(CURR_DIR, "test_data/")
+
+FILE_1 = os.path.join(TEST_DATA_DIR, "test_file_1.fastq")
+FILE_2 = os.path.join(TEST_DATA_DIR, "test_file_2.fastq")
+
+
+@pytest.fixture(scope="module")
+def cli_runner():
+    runner = CliRunner()
+    return runner
+
+
+def test_runner(cli_runner):
+    result = cli_runner.invoke(confil, ["--paired", FILE_1, FILE_2])
+    assert result.exit_code == 0