Mercurial > repos > sanbi-uwc > confil

annotate test/test_report.py @ 4:eaf51f9aff10 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/COMBAT-TB/confil commit 9e5284a2616de5d869319f9c4436716a3f6656f8-dirty
author sanbi-uwc
date Mon, 04 Mar 2019 03:28:57 -0500
parents 53a61865e86e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
1 import os
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
2
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
3 import pytest
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
4
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
5 from confil.report import parse_report
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
6 from test_runner import TEST_DATA_DIR
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
7
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
8 TEST_REPORT = os.path.join(TEST_DATA_DIR, "test_file.tab")
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
9
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
10 # test using a cutoff of 50%
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
11
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
12
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
13 @pytest.mark.parametrize("test_input, expected", [
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
14 (type(parse_report(TEST_REPORT, 50)), list),
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
15 (parse_report(TEST_REPORT, 50)[5], 'Mycobacterium'),
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
16 (parse_report(TEST_REPORT, 50)[0], '55.84')
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
17 ])
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
18 def test_parse_report(test_input, expected):
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
19 assert test_input == expected
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
20
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
21
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
22 def test_parse_report_exception():
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
23 with pytest.raises(SystemExit):
53a61865e86e planemo upload for repository https://github.com/COMBAT-TB/confil commit cb48efaef286f70c94607cb583a61bb9e3d71604
sanbi-uwc
parents:
diff changeset
24 parse_report(TEST_REPORT, 90)