Mercurial > repos > sanbi-uwc > confil

annotate test/test_report.py @ 13:bbf9ab2ebee7 draft default tip

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planemo upload for repository https://github.com/COMBAT-TB/confil commit fcda5ac2013e3253d68cb6db06acf3b5450dcd0c
author sanbi-uwc
date Tue, 12 Mar 2019 09:16:35 -0400
parents 5ec97cccb3fe
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5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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1 import os
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
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5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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3 import pytest
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
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5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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5 from confil.report import parse_report
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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6 from test_runner import TEST_DATA_DIR
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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8 TEST_REPORT = os.path.join(TEST_DATA_DIR, "test_file.tab")
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
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10 # test using a cutoff of 50%
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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13 @pytest.mark.parametrize("test_input, expected", [
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
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14 (type(parse_report(TEST_REPORT, 50)), list),
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
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15 (parse_report(TEST_REPORT, 50)[5], 'Mycobacterium'),
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
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16 (parse_report(TEST_REPORT, 50)[0], '55.84')
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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17 ])
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
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18 def test_parse_report(test_input, expected):
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
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19 assert test_input == expected
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
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5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
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5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
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22 def test_parse_report_exception():
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
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23 with pytest.raises(SystemExit):
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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24 parse_report(TEST_REPORT, 90)
5ec97cccb3fe planemo upload for repository https://github.com/COMBAT-TB/confil commit b1a96c1b50cea70a20d4e606100879da8b6ed1b2
sanbi-uwc
parents:
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25 parse_report(TEST_REPORT, 20)