# HG changeset patch # User sanbi-uwc # Date 1463390909 14400 # Node ID d89a58d00a926217362da6f08b8cd5c9092927ba # Parent 03ca4e5a3682f0ee83ca3222b6a92c7125700826 planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit 74c1cc58782b9960175753e731dfdd120f234b4c diff -r 03ca4e5a3682 -r d89a58d00a92 build_ctb_gene.py --- a/build_ctb_gene.py Mon May 16 04:53:09 2016 -0400 +++ b/build_ctb_gene.py Mon May 16 05:28:29 2016 -0400 @@ -6,10 +6,12 @@ import glob import logging -log = logging.getLogger( __name__ ) + +log = logging.getLogger(__name__) -def build_ctb_gene(output_file1, output_dir, input_file, mount_point ): - #cmdline_str = "build_ctb_gene goterms ${}".format(input_file) + +def build_ctb_gene(output_file1, output_dir, input_file, mount_point): + # cmdline_str = "build_ctb_gene goterms ${}".format(input_file) cmdline_str = "echo goterms" build_ctb = False try: @@ -19,9 +21,9 @@ log.debug("Error running the build_ctb_gene goterms", file=sys.stderr) # Read the files at the mount point and load the html file - if build_ctb == True: - files=glob.glob(mount_point) - output_file1 = """ + if build_ctb: + files = glob.glob(mount_point) + output_file1 = """ @@ -33,9 +35,9 @@ """ - for file in files: - output_file1 += """""" - output_file1 += """
Files
file
\n""" + for f in files: + output_file1 += "" + f + "" + output_file1 += """\n""" def main(): @@ -58,4 +60,5 @@ build_ctb_gene(args.output_file1, args.output_dir, args.input_file, args.mount_point) + if __name__ == "__main__": main()