# HG changeset patch
# User sanbi-uwc
# Date 1463658689 14400
# Node ID 71a3f4a25de30a513ccd889209f9d5c22838798b
# Parent  eb925a043a4323f81a06e1bbbf4e847fb6fe25dd
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit 79f3191bfc33e7bac3f31dc4ea519f99ffb09081

diff -r eb925a043a43 -r 71a3f4a25de3 build_ctb_gene.py
--- a/build_ctb_gene.py	Thu May 19 07:42:35 2016 -0400
+++ b/build_ctb_gene.py	Thu May 19 07:51:29 2016 -0400
@@ -27,10 +27,10 @@
         # cmdline_str = "build_ctb_gene goterms ${}".format(input_file)
         cmdline_str = "touch /tmp/foo.bar"
         cmdline_str = self.newSplit(cmdline_str)
-        build_ctb_run = True
+        build_ctb_run = False
         try:
             check_call(cmdline_str)
-            build_ctb_run = False
+            build_ctb_run = True
         except CalledProcessError:
             print("Error running the build_ctb_gene goterms", file=sys.stderr)
         if build_ctb_run:
@@ -50,7 +50,7 @@
         # retrieve neo4j files to the working gx directory
         result_file = glob.glob(self.args.mount_point + '/*')
         for file_name in result_file:
-            shutil.copy(file_name, self.args.outputdir)
+            shutil.copytree(file_name, self.args.outputdir)
 
 
 def main():