# HG changeset patch
# User sanbi-uwc
# Date 1464781048 14400
# Node ID 65df0b64db158d495ea3e706ea1e2ec0fe3d5a56
# Parent  8f16164019bdb2452a898bcaec8a1c2e32463ab8
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit d7d335bdd8e18529d643b7ce55a311db71f957bc

diff -r 8f16164019bd -r 65df0b64db15 build_ctb_gene.py
--- a/build_ctb_gene.py	Tue May 31 03:04:08 2016 -0400
+++ b/build_ctb_gene.py	Wed Jun 01 07:37:28 2016 -0400
@@ -38,6 +38,7 @@
         # Check whether the options are specified and saves them into the object
         # assert args != None
         self.args = args
+        self.outputdir = args.outputdir
         self.mount_point = None
         self.docker_instance_name = "build_ctb_gene_" + str(random.randrange(0, 1000, 2))
 
@@ -50,7 +51,7 @@
             print("Error running the build_ctb_gene goterms", file=sys.stderr)
             return None
         else:
-            self.copy_output_file_to_dataset()
+            # self.copy_output_file_to_dataset()
             print("Building a new DB, current time: %s" % str(datetime.date.today()))
             print("GFF File - Input: %s" % str(self.args.input_file))
             return True
@@ -89,7 +90,7 @@
             return True
 
     def docker_run(self):
-        self.mount_point = "{}/neo4j/data".format(os.getcwd())
+        self.mount_point = "{}".format(self.outputdir)
         try:
             os.makedirs(self.mount_point)
         except os.error as e:
diff -r 8f16164019bd -r 65df0b64db15 build_ctb_gene.xml
--- a/build_ctb_gene.xml	Tue May 31 03:04:08 2016 -0400
+++ b/build_ctb_gene.xml	Wed Jun 01 07:37:28 2016 -0400
@@ -1,5 +1,5 @@
-<?xml version="1.0.1" encoding="utf-8" ?>
-<tool id="build_ctb_gene" name="Build_ctb_gene Tool" version="1.0">
+<?xml version="1.0" encoding="utf-8" ?>
+<tool id="build_ctb_gene" name="Build_ctb_gene Tool" version="1.0.2">
     <requirements>
        <requirement type="package" version="0.1">build_ctb_gene_neo4j</requirement>
     </requirements>