Mercurial > repos > sanbi-uwc > build_ctb_gene

diff build_ctb_gene.py @ 9:9cc174f0fb9f draft

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planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit 2b6755be1c76f3e4209f9723e7f50f945939244f
author sanbi-uwc
date Mon, 16 May 2016 05:45:10 -0400
parents 56555326a056
children cb322069c7bc
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line diff
--- a/build_ctb_gene.py	Mon May 16 05:32:38 2016 -0400
+++ b/build_ctb_gene.py	Mon May 16 05:45:10 2016 -0400
@@ -12,7 +12,8 @@
 
 def build_ctb_gene(output_file1, output_dir, input_file, mount_point):
     # cmdline_str = "build_ctb_gene goterms ${}".format(input_file)
-    cmdline_str = "echo goterms"
+    cmdline_str = "echo %s" % input_file
+    output_dir = mount_point
     build_ctb = False
     try:
         os.system(cmdline_str)