# HG changeset patch
# User sanbi-uwc
# Date 1663149903 0
# Node ID ca5b3e9740b9bc6c4bb15a59b2463a13a2d9f934
# Parent  0e556a3f85d60f957a19e0230af6da3fb2eb4330
planemo upload for repository https://github.com/pvanheus/polio_report commit a99e10fec2fac5aae70974c977eb3b362a1a8429-dirty

diff -r 0e556a3f85d6 -r ca5b3e9740b9 assess_poliovirus_alignment.xml
--- a/assess_poliovirus_alignment.xml	Wed Sep 14 09:21:44 2022 +0000
+++ b/assess_poliovirus_alignment.xml	Wed Sep 14 10:05:03 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="assess_poliovirus_alignment" name="Assess poliovirus alignment" version="0.4.0+galaxy0" profile="21.05">
+<tool id="assess_poliovirus_alignment" name="Assess poliovirus alignment" version="0.5.0+galaxy0" profile="21.05">
     <requirements>
         <requirement type="package" version="3.9">python</requirement>
     </requirements>
@@ -22,6 +22,7 @@
     <inputs>
         <!-- input is list of reports for poliovirus sabin 1, 2 and 3 -->
         <param name="tracy_results" format="json" type="data_collection" collection_type="list" label="Tracy JSON reports" help="Input is a list of tracy assemble JSON reports for assembly guided by there reference sequences for poliovirus sabin 1, 2 and 3" />
+        <param name="tracy_consensus_results" format="FASTA" type="data_collection" collection_type="list" label="Tracy Consensus sequences" help="Input is a list of tracy assemble consensus sequences for assembly guided by there reference sequences for poliovirus sabin 1, 2 and 3" />
     </inputs>
     <outputs>
         <data name="output1" format="json" label="Poliovirus alignment assessment on ${on_string}" />