# HG changeset patch
# User sanbi-uwc
# Date 1663154743 0
# Node ID 852e76e7d22ae3620028d24ebfeebf3df13c3dd8
# Parent  9fd6dde72d2e1f2500e84a361768cecb8329a8c3
planemo upload for repository https://github.com/pvanheus/polio_report commit a99e10fec2fac5aae70974c977eb3b362a1a8429-dirty

diff -r 9fd6dde72d2e -r 852e76e7d22a assess_alignment.py
--- a/assess_alignment.py	Wed Sep 14 11:11:02 2022 +0000
+++ b/assess_alignment.py	Wed Sep 14 11:25:43 2022 +0000
@@ -184,7 +184,7 @@
             best_match_mismatch_list = mismatch_list
             best_match_quality = quality
             best_match_reference = dataset_name
-            best_consensus = open(args.consensi[file_index]).read()
+            best_consensus = open(args.consensi[file_index]).read().replace('>Consensus', f'>{args.sample_name}')
             percent_mismatches = round(min_mismatches / lengths[best_match_reference] * 100, 2)
 
     info = {
diff -r 9fd6dde72d2e -r 852e76e7d22a assess_poliovirus_alignment.xml
--- a/assess_poliovirus_alignment.xml	Wed Sep 14 11:11:02 2022 +0000
+++ b/assess_poliovirus_alignment.xml	Wed Sep 14 11:25:43 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="assess_poliovirus_alignment" name="Assess poliovirus alignment" version="0.6.0+galaxy0" profile="21.05">
+<tool id="assess_poliovirus_alignment" name="Assess poliovirus alignment" version="0.7.0+galaxy0" profile="21.05">
     <requirements>
         <requirement type="package" version="3.9">python</requirement>
     </requirements>