Mercurial > repos > sanbi-uwc > assess_poliovirus_alignment

comparison assess_alignment.py @ 11:fff48fa8a22b draft

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planemo upload for repository https://github.com/pvanheus/polio_report commit aa90f911e6269aba792c9814c98a659e631400b2-dirty
author sanbi-uwc
date Tue, 27 Sep 2022 09:18:56 +0000
parents fb905d0f8201
children ee98dcd9aad4
comparison
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10:fb905d0f8201 11:fff48fa8a22b
210 "perc_mismatches": percent_mismatches, 210 "perc_mismatches": percent_mismatches,
211 "consensus": best_consensus 211 "consensus": best_consensus
212 } 212 }
213 json.dump(info, open(args.output_filename, "w")) 213 json.dump(info, open(args.output_filename, "w"))
214 214
215 open(args.consensus_output_filename, "w").write(f'>{args.sample_name}\n' + fill(best_consensus)) 215 open(args.consensus_output_filename, "w").write(f'>{args.sample_name}\n' + fill(best_consensus) + '\n')