comparison tools/oncodrivefm_tool/oncodrivefm_tool.xml @ 2:09f9829f1400

tag

1:386fa4776fde

<tool id="oncodrivefm_tool" name="OncodriveFM">
    <description>OncodriveFM </description>
    <requirements>
            <requirement type="package" version="2.0.1">requests</requirement>
    </requirements>
    <tool_dependency>
        <package name="oncodrivefm">
            <install version="0.6-dev">
                <actions>
                    <action type="setup_virtualenv">distribute</action>
                    <action type="setup_virtualenv">python-dateutil==2.1</action>
                    <action type="setup_virtualenv">pytz==2013b</action>
                    <action type="setup_virtualenv">numpy==1.7.1</action>
                    <action type="setup_virtualenv">scipy==0.12.0</action>
                    <action type="setup_virtualenv">pandas==0.12.0</action>
                    <action type="setup_virtualenv">statsmodels==0.4.3</action>
                    <action type="setup_virtualenv">https://bitbucket.org/bbglab/oncodrivefm/get/master.tar.gz</action>
                </actions>
            </install>
            <readme>OncodriveFm avalable at https://bitbucket.org/bbglab/oncodrivefm/</readme>
        </package>
    </tool_dependency>

    <command interpreter="python">
        #if $mappingpathcondition.hasmapfile=="yes"
            oncodrivefm_tool.py -N $samplings -e $estimator --gt $gene_threshold --pt $pathway_threshold -s $slices -m $mapping_path -o1 $output1 -o2 $output2 -i $input
        #else

2:09f9829f1400

<tool id="oncodrivefm_tool" name="OncodriveFM">
    <description>OncodriveFM </description>
    <requirements>
            <requirement type="package" version="2.0.1">requests</requirement>
    </requirements>

    <command interpreter="python">
        #if $mappingpathcondition.hasmapfile=="yes"
            oncodrivefm_tool.py -N $samplings -e $estimator --gt $gene_threshold --pt $pathway_threshold -s $slices -m $mapping_path -o1 $output1 -o2 $output2 -i $input
        #else