comparison mutationassesor_web/mutation_assesor.py @ 10:ef0e61eded84 draft default tip

Uploaded

9:31a4177a694f

import sys
import requests
import os
import argparse
import re

__url__ = 'http://mutationassessor.org/'


def stop_err(msg, err=1):
    sys.stderr.write('%s\n' % msg)

    if request.status_code != requests.codes.ok:
        stop_err("""Error retrieving response from server.
                 Server returned %s .
                 Output: %s
                 """ % (request.status_code, response))
    with open(args.output, 'wb') as fp:
        fp.write(response)

if __name__ == '__main__':
    parser = argparse.ArgumentParser(description="Process input output paths")
    parser.add_argument('--input',
                        type=str,

10:ef0e61eded84

import sys
import requests
import os
import argparse
import re
import csv
import StringIO
__url__ = 'http://mutationassessor.org/'


def stop_err(msg, err=1):
    sys.stderr.write('%s\n' % msg)

    if request.status_code != requests.codes.ok:
        stop_err("""Error retrieving response from server.
                 Server returned %s .
                 Output: %s
                 """ % (request.status_code, response))
    r = StringIO.StringIO(response)
    reader = csv.reader(r, delimiter=",")
    csv.writer(open(args.output, "wb"), delimiter='\t').writerows(reader)

if __name__ == '__main__':
    parser = argparse.ArgumentParser(description="Process input output paths")
    parser.add_argument('--input',
                        type=str,