annotate condel_web/condel_web.py @ 7:67212f958e5a draft default tip

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author saketkc
date Tue, 15 Apr 2014 13:04:57 -0400
parents 65a71127f1fa
children
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1 import sys
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2 import requests
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3 import pycurl
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4 import os
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5 from os.path import getsize
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6 import argparse
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7 import cStringIO
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8 from functools import wraps
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9 import tempfile
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10 import shutil
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11 import time
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12
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13 __url__ = "http://bg.upf.edu/condel/taskService"
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14
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15
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16 def stop_err(msg):
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17 sys.stderr.write('%s\n' % msg)
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18 sys.exit()
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19
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20
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21 def retry(ExceptionToCheck, tries=10, delay=3, backoff=2, logger=None):
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22 """Retry calling the decorated function using an exponential backoff.
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23
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24 http://www.saltycrane.com/blog/2009/11/trying-out-retry-decorator-python/
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25 original from: http://wiki.python.org/moin/PythonDecoratorLibrary#Retry
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26
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27 :param ExceptionToCheck: the exception to check. may be a tuple of
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28 exceptions to check
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29 :type ExceptionToCheck: Exception or tuple
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30 :param tries: number of times to try (not retry) before giving up
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31 :type tries: int
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32 :param delay: initial delay between retries in seconds
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33 :type delay: int
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34 :param backoff: backoff multiplier e.g. value of 2 will double the delay
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35 each retry
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36 :type backoff: int
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37 :param logger: logger to use. If None, print
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38 :type logger: logging.Logger instance
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39 """
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40 def deco_retry(f):
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41 @wraps(f)
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42 def f_retry(*args, **kwargs):
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43 mtries, mdelay = tries, delay
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44 while mtries > 1:
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45 try:
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46 return f(*args, **kwargs)
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47 except ExceptionToCheck, e:
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48 #msg = "%s, Retrying in %d seconds..." % (str(e), mdelay)
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49 msg = "Retrying in %d seconds..." % (mdelay)
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50 if logger:
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51 logger.warning(msg)
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52 else:
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53 # print msg
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54 pass
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55 time.sleep(mdelay)
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56 mtries -= 1
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57 mdelay *= backoff
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58 return f(*args, **kwargs)
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59
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60 return f_retry # true decorator
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61
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62 return deco_retry
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63
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64
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65 class TransficUploader:
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66
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67 def __init__(self):
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68
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69 self.c = pycurl.Curl()
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70 self.c.setopt(pycurl.URL, __url__)
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71 self.c.setopt(pycurl.UPLOAD, 1)
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72 self.c.setopt(pycurl.PROXY,
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73 os.env['http_proxy'])
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74 #'http://saket.kumar:uzfmTjX9839.1314@netmon.iitb.ac.in:80/')
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75 self.c.setopt(pycurl.HTTPHEADER, ['Expect:'])
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76 self.c.setopt(pycurl.UPLOAD, 1)
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77 self.c.setopt(pycurl.NOPROGRESS, 1)
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78 self.c.setopt(pycurl.USERAGENT, "curl/7.27.0")
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79 self.c.setopt(pycurl.SSL_VERIFYPEER, 1)
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80 self.c.setopt(pycurl.CUSTOMREQUEST, "PUT")
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81 self.c.setopt(pycurl.TCP_NODELAY, 1)
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82 self.buf = cStringIO.StringIO()
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83 self.c.setopt(self.c.WRITEFUNCTION, self.buf.write)
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84
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85 def upload_file(self, filepath):
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86 f = open(filepath)
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87 self.c.setopt(pycurl.INFILE, f)
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88 self.c.setopt(pycurl.INFILESIZE, getsize(filepath))
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89
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90 def run(self):
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91 self.c.perform()
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92
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93 def get_url(self):
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94 return self.buf.getvalue().strip()
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95
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96 @retry(requests.exceptions.HTTPError)
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97 def result_exists(self, url):
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98 #url="http://www.cravat.us/results/%s/%s.zip" %(job_id,job_id)
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99 download_request = requests.request("GET", url)
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100 if download_request.status_code == 404 or download_request == 500:
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101 raise requests.HTTPError()
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102 else:
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103 return url
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104
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105 @retry(requests.exceptions.HTTPError)
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106 def download_result(self, url, outpath):
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107 tmp_dir = tempfile.mkdtemp()
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108 r = requests.get(url, stream=True)
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109 if r.status_code == 500:
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110 raise requests.HTTPError()
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111 else:
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112 path = os.path.join(tmp_dir, "results.csv")
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113 with open(path, 'wb') as f:
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114 for chunk in r.iter_content(128):
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115 f.write(chunk)
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116 shutil.move(path, outpath)
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117 shutil.rmtree(tmp_dir)
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118
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119
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120 def main(params):
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121 parser = argparse.ArgumentParser()
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122 parser.add_argument("--input", type=str, required=True)
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123 parser.add_argument("--output", type=str, required=True)
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124 args = parser.parse_args(params)
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125 uploader = TransficUploader()
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126 uploader.upload_file(args.input)
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127 uploader.run()
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128 url = uploader.get_url()
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129 url = uploader.result_exists(url)
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130 uploader.download_result(url, args.output)
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131
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132
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133 if __name__ == "__main__":
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134 main(sys.argv[1:])