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view chasm_webservice/test-data/polyphen2_log.txt @ 6:d88b17f16b14 draft

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author saketkc
date Tue, 15 Apr 2014 13:06:25 -0400
parents b9de63c72559
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===========================
Stage 1/7: Validating input
===========================
No errors

===============================
Stage 2/7: Mapping genomic SNPs
===============================
WARNING: (chr22:40814500 - uc003ayv.1) None of the input alleles (A/G) matches reference allele (T)
WARNING: (chr22:40814500 - uc003ayw.1) None of the input alleles (A/G) matches reference allele (T)
WARNING: (chr22:40814500 - uc010gye.1) None of the input alleles (A/G) matches reference allele (T)
WARNING: (chr22:40814500 - uc010gyf.1) None of the input alleles (A/G) matches reference allele (T)
Total errors/warnings: 4

============================
Stage 3/7: Collecting output
============================
No errors

===============================================
Stage 4/7: Building MSA and annotating proteins
===============================================
No errors

============================
Stage 5/7: Collecting output
============================
No errors

=====================
Stage 6/7: Predicting
=====================
No errors

=============================
Stage 7/7: Generating reports
=============================
No errors