diff chasm_webservice/test-data/chasm_output_genes.tabular @ 9:473d1c2ca65d draft default tip

Uploaded

--- a/chasm_webservice/test-data/chasm_output_genes.tabular	Wed Jul 16 20:31:41 2014 -0400
+++ b/chasm_webservice/test-data/chasm_output_genes.tabular	Tue Oct 07 18:32:57 2014 -0400
@@ -1,14 +1,15 @@
 #Gene Level Analysis Report
-#2014-07-15 03:23:43.461186
+#2014-08-28 22:54:22.487967
+#CRAVAT version: 3.1
 #Analysis done at http://www.cravat.us.
-#Input file: dataset_346.dat
+#Input file: dataset_1.dat
 #This report shows analysis results at gene level.
 #The composite p-value (Stouffer's combined p-value) and composite FDR of a gene show how probable it is to get the same p-value distribution for the gene as that obtained from the input variants by chance.
 #Input coordinate was hg19 genomic.
 #Tissue type for CHASM analysis: Other
 #For more information on CRAVAT, visit http://www.cravat.us.
 #
-HUGO symbol	Best driver score from representative transcripts	Composite p value	Composite FDR	Occurrences in study [gene mutated]	Occurrences in COSMIC [gene mutated]	Occurrences in COSMIC by primary sites [gene mutated]	MuPIT link
-MTMR3	0.6	0.3364	0.55	1	102	upper_aerodigestive_tract(2);large_intestine(24);haematopoietic_and_lymphoid_tissue(5);endometrium(12);urinary_tract(4);oesophagus(1);liver(3);skin(17);lung(17);ovary(5);prostate(2);kidney(4);breast(6
)	 
-ZNRF3	0.514	0.171	0.55	2	73	upper_aerodigestive_tract(2);large_intestine(19);autonomic_ganglia(1);haematopoietic_and_lymphoid_tissue(2);endometrium(12);urinary_tract(2);lung(16);liver(5);skin(1);oesophagus(3);ovary(2);NS(1);prostate(2);kidney(3);breast(2
)	 
-MKL1	0.728	0.793956248886469	1	2	68	large_intestine(15);stomach(2);central_nervous_system(1);haematopoietic_and_lymphoid_tissue(3);endometrium(13);urinary_tract(1);lung(19);breast(3);skin(1);ovary(5);kidney(4);liver(1
)	 
+HUGO symbol	Driver Genes	TARGET	Best driver score from representative transcripts	Occurrences in study [gene mutated]	Occurrences in COSMIC [gene mutated]	Occurrences in COSMIC by primary sites [gene mutated]	MuPIT link
+MTMR3			0.582	1	103	upper_aerodigestive_tract(2);large_intestine(24);haematopoietic_and_lymphoid_tissue(5);endometrium(12);urinary_tract(4);oesophagus(1);breast(6);skin(17);lung(17);ovary(5);NS(1);prostate(2);kidney(4);liver(3)	 
+ZNRF3			0.524	2	73	upper_aerodigestive_tract(2);large_intestine(19);autonomic_ganglia(1);haematopoietic_and_lymphoid_tissue(2);endometrium(12);urinary_tract(2);lung(16);liver(5);skin(1);oesophagus(3);ovary(2);NS(1);prostate(2);kidney(3);breast(2)	 
+MKL1			0.668	2	68	large_intestine(15);stomach(2);central_nervous_system(1);haematopoietic_and_lymphoid_tissue(3);endometrium(13);urinary_tract(1);lung(19);breast(3);skin(1);ovary(5);kidney(4);liver(1)