Mercurial > repos > saketkc > chasm_web

diff chasm_webservice/test-data/polyphen2_log.txt @ 5:b9de63c72559 draft

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author saketkc
date Mon, 14 Apr 2014 19:16:11 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/chasm_webservice/test-data/polyphen2_log.txt	Mon Apr 14 19:16:11 2014 -0400
@@ -0,0 +1,38 @@
+===========================
+Stage 1/7: Validating input
+===========================
+No errors
+
+===============================
+Stage 2/7: Mapping genomic SNPs
+===============================
+WARNING: (chr22:40814500 - uc003ayv.1) None of the input alleles (A/G) matches reference allele (T)
+WARNING: (chr22:40814500 - uc003ayw.1) None of the input alleles (A/G) matches reference allele (T)
+WARNING: (chr22:40814500 - uc010gye.1) None of the input alleles (A/G) matches reference allele (T)
+WARNING: (chr22:40814500 - uc010gyf.1) None of the input alleles (A/G) matches reference allele (T)
+Total errors/warnings: 4
+
+============================
+Stage 3/7: Collecting output
+============================
+No errors
+
+===============================================
+Stage 4/7: Building MSA and annotating proteins
+===============================================
+No errors
+
+============================
+Stage 5/7: Collecting output
+============================
+No errors
+
+=====================
+Stage 6/7: Predicting
+=====================
+No errors
+
+=============================
+Stage 7/7: Generating reports
+=============================
+No errors