Mercurial > repos > saketkc > chasm_web
diff tools/chasm/README.rst @ 1:8eaaa7f6b619
Move files to tools
author | Saket Choudhary <saketkc@gmail.com> |
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date | Fri, 01 Nov 2013 02:07:53 +0530 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/chasm/README.rst Fri Nov 01 02:07:53 2013 +0530 @@ -0,0 +1,38 @@ +Galaxy wrapper for the CHASM webservice at CRAVAT(v2.0) +=================================================== + +This tool is copyright 2013 by Saket Choudhary, Indian Institute of Technology Bombay +All rights reserved. MIT licensed. + +Licence (MIT) +============= + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE. + +Citations +=========== + + +If you use this Galaxy tool in work leading to a scientific publication please cite: + +Carter, Hannah, et al. "Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations." +Cancer research 69.16 (2009): 6660-6667. + +Wong, Wing Chung, et al. "CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer." +Bioinformatics 27.15 (2011): 2147-2148.