Mercurial > repos > ryotas > tophat2_docker

annotate tool_data_table_conf.xml.sample @ 0:92e9168067b6 default tip

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author ryotas <yamanaka@genome.rcast.u-tokyo.ac.jp>
date Thu, 22 Oct 2015 16:02:19 +0900
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ryotas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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1 <!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
ryotas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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2 <tables>
ryotas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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3 <!-- Locations of indexes in the Bowtie2 mapper format for TopHat2 to use -->
ryotas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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4 <table name="tophat2_indexes" comment_char="#">
ryotas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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5 <columns>value, dbkey, name, path</columns>
ryotas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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6 <file path="tool-data/bowtie2_indices.loc" />
ryotas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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7 </table>
ryotas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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8 </tables>