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diff viewer.xml @ 0:aa7a5cc0f59b default tip

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author ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
date Tue, 30 Dec 2014 18:27:26 +0900
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/viewer.xml	Tue Dec 30 18:27:26 2014 +0900
@@ -0,0 +1,36 @@
+<tool name="Graph Viewer" id="graph_viewer" tool_type="data_source">
+    <description></description>
+    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
+    <inputs action="http://localhost/viewer/index.html" check_values="false" method="get">
+        <display>go to Graph Viewer $GALAXY_URL</display>
+        <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
+        <param name="tool_id" type="hidden" value="ucsc_table_direct1" />
+        <param name="sendToGalaxy" type="hidden" value="1" />
+        <param name="hgta_compressType" type="hidden" value="none" />
+        <param name="hgta_outputType" type="hidden" value="bed" />
+    </inputs>
+    <request_param_translation>
+        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
+        <request_param galaxy_name="URL" remote_name="URL" missing="" />
+        <request_param galaxy_name="dbkey" remote_name="db" missing="?" />
+        <request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
+        <request_param galaxy_name="table" remote_name="hgta_table" missing="unknown table" />
+        <request_param galaxy_name="description" remote_name="hgta_regionType" missing="no description" />
+        <request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="auto" >
+            <value_translation>
+                <value galaxy_value="auto" remote_value="primaryTable" />
+                <value galaxy_value="auto" remote_value="selectedFields" />
+                <value galaxy_value="wig" remote_value="wigData" />
+                <value galaxy_value="interval" remote_value="tab" />
+                <value galaxy_value="html" remote_value="hyperlinks" />
+                <value galaxy_value="fasta" remote_value="sequence" />
+                <value galaxy_value="gtf" remote_value="gff" />
+            </value_translation>
+        </request_param>
+    </request_param_translation>
+    <uihints minwidth="800"/>
+    <outputs>
+        <data name="output" format="tabular" label="${tool.name} on ${organism}: ${table} (#if $description == 'range' then $getVar( 'position', 'unknown position' ) else $description#)"/>
+    </outputs>
+    <options sanitize="False" refresh="True"/>
+</tool>