Mercurial > repos > ryotas > cypher_tools

annotate graph2db.xml @ 0:aa7a5cc0f59b default tip

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author ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
date Tue, 30 Dec 2014 18:27:26 +0900
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ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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1 <tool id="graph2db" name="Graph-to-DB" version="0.2.1">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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2 <description>Loader</description>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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3 <command interpreter="node">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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4 neo4j_loader.js $input_file_n $input_file_r $namespace $host $port 1 > $log_file
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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5 </command>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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6 <inputs>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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7 <param name="host" type="text" size="50" value="localhost" label="Neo4j Host"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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8 <param name="port" type="text" size="10" value="7474" label="Neo4j Port"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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9 <param name="namespace" type="text" size="50" value="http://sem4j.org/" label="Namespace"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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10 <param name="input_file_n" type="data" format="txt" label="Input Node File (txt)"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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11 <param name="input_file_r" type="data" format="txt" label="Input Relation File (txt)"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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12 </inputs>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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13 <outputs>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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14 <data name="log_file" format="txt" label="${tool.name} on ${on_string} (log)"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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15 </outputs>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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16 <help>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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17 **What it does**
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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18 </help>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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19 </tool>