Mercurial > repos > rnateam > segemehl

@HD	VN:1.0
@SQ	SN:TestChromosomeForGalaxy	LN:3459
@PG	ID:segemehl	VN:0.2.0-$Rev: 418 $ ($Date: 2015-01-05 05:17:35 -0500 (Mon, 05 Jan 2015) $)	CL:segemehl.x -t 2 -d test-data/chr1.fa -i test-data/chr1.idx -q test-data/test.fastq -m 12 -A 85 -H 1 -M 100 -E 5.0 -D 1 -s --splits --minsplicecover 40 -o testout2.sam
10.516 HWI-EAS100R:1:1:550:1622/1	0	TestChromosomeForGalaxy	182	255	70M	*	0	0	CATGTACTGTTAAAGCGTGCGTTTATTTCAAACATTAATGAAATTTGCAGAACCCAAACTAAAGAGAGAG	3MIa!,$)8EA)!1>tMJ{:2WrL`s|`gg{]'0+Op!6RxNw;V)XKV#Go5}b!`_V]A?!F>{LM(z	NM:i:0	MD:Z:70	NH:i:1	XI:i:0	XA:Z:Q
10.2869 HWI-EAS100R:1:1:1698:585/1	0	TestChromosomeForGalaxy	661	255	70M	*	0	0	AACCATGCATAAAAGGGGTTCGCCGTTCTCGGAGAGCCACAGAGCCCGGGCCACAGGCAGCTCCTTGCCA	Q-a;@)*!F]Za^4!P*B?&!!No!^76b+X[6eOgr1$3:-Ywg;!Vzj!`=+e>YV|ok_z!D<2+jx	NM:i:0	MD:Z:70	NH:i:1	XI:i:0	XA:Z:Q
10.2085 HWI-EAS100R:1:1:32:109/2	0	TestChromosomeForGalaxy	1021	255	70M	*	0	0	GGGAATTCACCTCAAGAACATCCAAAGTGTGAAGGTGAAGTCCCCCGGACCCCACTGCGCCCAAACCGAA	V:e@~!I\GQ>>]?)-qpe!nVI4IJ+4!wE{YoSsVrr~P;PnY/.!a;~!S"n+J#St-g!lQdGA9;	NM:i:0	MD:Z:70	NH:i:1	XI:i:0	XA:Z:Q
10.2869 HWI-EAS100R:1:1:1698:585/2	0	TestChromosomeForGalaxy	1321	255	43M	*	0	0	CGACTGGAGCTGTTGGTCAGAAATACTGGCGTCTGCCCCCTAA	btOb!D1"=hSm"'G_#I{b!!l#6JQ&iq4A`F%Uug!x!'h	NM:i:0	MD:Z:43	NH:i:1	XI:i:0	XL:i:2	XA:Z:Q	XX:i:1	XY:i:43	XQ:i:0	XC:Z:TestChromosomeForGalaxy	XV:i:2123	XT:i:32
10.2869 HWI-EAS100R:1:1:1698:585/2	0	TestChromosomeForGalaxy	2123	255	27M	*	0	0	TGGCAAATCCAACTGACCAGAAGGAAG	7o<%qCKQEtM)!bP>!."DvsX9T}=	NM:i:0	MD:Z:27	NH:i:1	XI:i:0	XL:i:2	XA:Z:Q	XX:i:44	XY:i:70	XQ:i:1	XP:Z:TestChromosomeForGalaxy	XU:i:1363	XS:i:64
10.516 HWI-EAS100R:1:1:550:1623/1	0	TestChromosomeForGalaxy	182	255	70M	*	0	0	CATGTACTGTTAAAGCGTGCGTTTATTTCAAACATTAATGAAATTTGCAGAACCCAAACTAAAGAGAGAG	3MIa!,$)8EA)!1>tMJ{:2WrL`s|`gg{]'0+Op!6RxNw;V)XKV#Go5}b!`_V]A?!F>{LM(z	NM:i:0	MD:Z:70	NH:i:1	XI:i:0	XA:Z:Q
author	bgruening
date	Wed, 26 Jul 2017 15:25:28 -0400
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