# HG changeset patch
# User rnateam
# Date 1469777264 14400
# Node ID 79c9b4b34b632f041151e4a3730edd8ebe333a07
# Parent  d04fa5201f51157c0e8cf9842a998c507cc3338b
planemo upload for repository https://github.com/bgruening/galaxytools/tree/rna_commander/tools/rna_tools/rna_commender commit 7ef62aa3d86abd4b911e35447646712a4628e7fe

diff -r d04fa5201f51 -r 79c9b4b34b63 main.py
--- a/main.py	Thu Jul 28 05:56:54 2016 -0400
+++ b/main.py	Fri Jul 29 03:27:44 2016 -0400
@@ -44,5 +44,7 @@
         P.predict()
     else:
         sys.stdout.write("""
-        The queried protein has no domain similarity with the proteins in the training dataset. It cannot be predicted.
+        ########################################
+        WARNING: The queried protein has no domain similarity with the proteins in the training dataset. It cannot be predicted.
+        ########################################
         """)
diff -r d04fa5201f51 -r 79c9b4b34b63 rnacommender.xml
--- a/rnacommender.xml	Thu Jul 28 05:56:54 2016 -0400
+++ b/rnacommender.xml	Fri Jul 29 03:27:44 2016 -0400
@@ -9,7 +9,13 @@
         <requirement type="package" version="0.8.2">theano</requirement>
         <requirement type="package" version="2.10.0">requests</requirement>
     </requirements>
-    <command detect_errors="aggressive">
+    <stdio>
+        <exit_code range="1:" />
+        <exit_code range=":-1" />
+        <regex match="Error:" />
+        <regex match="Exception:" />
+    </stdio>
+    <command>
     <![CDATA[
         sh $__tool_directory__/init.sh 2> hide.txt &&
         THEANO_FLAGS=base_compiledir=./tmp python $__tool_directory__/main.py "$infile"