diff create_input_file.py @ 0:01f42efba177 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/remurna commit 6e51a331dbeab2786d8df5fd379ae3a63eb61d83
author rnateam
date Tue, 13 Dec 2016 11:47:56 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/create_input_file.py	Tue Dec 13 11:47:56 2016 -0500
@@ -0,0 +1,13 @@
+import sys
+import os
+wild_fa = sys.argv[1]
+snp_tags = sys.argv[2]
+outfile = sys.argv[3]
+# Write RNA sequence and SNP tags to a outfile
+out = open(outfile,'w')
+with open (wild_fa) as in_fa_handle:
+    for line in in_fa_handle:
+        out.write(line)
+with open (snp_tags) as in_snp_handle:
+    out.write('*'+in_snp_handle.readline())
+out.close()