# HG changeset patch
# User rnateam
# Date 1423752347 18000
# Node ID bda96b97c28995b4a7197faa167c68e4e47d5832
# Parent  80c9599143f76dffa3dde65d3ccd59323e45e70f
Uploaded

diff -r 80c9599143f7 -r bda96b97c289 mapper.xml
--- a/mapper.xml	Fri Jan 16 08:43:27 2015 -0500
+++ b/mapper.xml	Thu Feb 12 09:45:47 2015 -0500
@@ -73,7 +73,7 @@
             #if $operation.refGenomeSource.genomeSource == "history"
                 custom_bowtie_indices
             #else
-                $index
+                $operation.refGenomeSource.index
             #end if
 
             $operation.map_mismatch
diff -r 80c9599143f7 -r bda96b97c289 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Jan 16 08:43:27 2015 -0500
+++ b/tool_dependencies.xml	Thu Feb 12 09:45:47 2015 -0500
@@ -1,10 +1,10 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="perl" version="5.18.1">
-        <repository changeset_revision="a1a111b9faa5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="bowtie" version="0.12.7">
-        <repository changeset_revision="f54826948b0b" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="f0faa5eea2eb" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="mirdeep2_mapper" version="2.0">
         <install version="1.0">