# HG changeset patch
# User rnateam
# Date 1523377239 14400
# Node ID 9ed3c3234f03fe1414d54c35c0df51890ce1a7fa
# Parent  9769fa6f0afb1d490585c42a9951a51880b67bb1
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/intarna commit da73dae857c2ee9447aad05f260f7da5ea1db3a6

diff -r 9769fa6f0afb -r 9ed3c3234f03 intarna.xml
--- a/intarna.xml	Tue Apr 10 09:18:52 2018 -0400
+++ b/intarna.xml	Tue Apr 10 12:20:39 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="intarna" name="IntaRNA" version="2.1.0.2">
+<tool id="intarna" name="IntaRNA" version="2.2.0">
     <description>Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites.</description>
     <macros>
         <macro name="query_macro">
@@ -48,7 +48,7 @@
                 label="Max. loop length" help="... for query accessibility computation. 0 defaults to sliding window size 'tAccW'"/>
         </macro>
         <macro name="seed_macro">
-            <param argument="--noSeed" truevalue="--noSeed" falsevalue="" checked="False" type="boolean"
+            <param argument="--noSeed" truevalue="--noSeed" falsevalue="" checked="false" type="boolean"
                 label="Disable seed constraint entirely for computation" help=""/>
             <param argument="--seedBP" type="integer" value="7" min="2" max="20"  label="Min. number of basepairs in seed" help="number of inter-molecular base pairs within the seed region"/>
             <param argument="--seedMaxUP" type="integer" value="0" min="0" max="20"
@@ -84,7 +84,7 @@
         </macro>
     </macros>
     <requirements>
-        <requirement type="package" version="2.1.0">intarna</requirement>
+        <requirement type="package" version="2.2.0">intarna</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
diff -r 9769fa6f0afb -r 9ed3c3234f03 test-data/intarna_result.tabular
--- a/test-data/intarna_result.tabular	Tue Apr 10 09:18:52 2018 -0400
+++ b/test-data/intarna_result.tabular	Tue Apr 10 12:20:39 2018 -0400
@@ -1,4 +1,4 @@
 id1	start1	end1	id2	start2	end2	subseqDP	hybridDP	E
-mRNA1	85	95	ncRNA1	21	32	GUGGUGAGGAG&CUCCUCACACAC	(((((((((((&)))))))).)))	-12.0345
-mRNA1	52	58	ncRNA2	28	34	UCAGUUA&UGACUGA	(((((((&)))))))	-3.32148
-mRNA2	86	97	ncRNA1	20	31	UGUGUGACGAGU&ACUCCUCACACA	(((((((.((((&)))).)))))))	-8.33678
+mRNA1	85	95	ncRNA1	21	32	GUGGUGAGGAG&CUCCUCACACAC	(((((((((((&)))))))).)))	-11.8783
+mRNA1	52	58	ncRNA2	28	34	UCAGUUA&UGACUGA	(((((((&)))))))	-3.08648
+mRNA2	86	97	ncRNA1	20	31	UGUGUGACGAGU&ACUCCUCACACA	(((((((.((((&)))).)))))))	-8.16744