Mercurial > repos > rnateam > graphprot_predict_profile
comparison graphprot_train_predict.xml @ 2:4cebb3439e1a draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/graphprot commit afbe0da7a518d6fc60ea066917b1e567c8c42391"
| author | bgruening |
|---|---|
| date | Mon, 27 Jan 2020 23:36:37 +0000 |
| parents | adcc4c457c3c |
| children | 58ebf089377e |
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| 1:adcc4c457c3c | 2:4cebb3439e1a |
|---|---|
| 152 <data name="seq_motif_png_out_file" format="png" from_work_dir="GraphProt.sequence_motif.png" label="${tool.name} on ${on_string}: GraphProt sequence motif png file"> | 152 <data name="seq_motif_png_out_file" format="png" from_work_dir="GraphProt.sequence_motif.png" label="${tool.name} on ${on_string}: GraphProt sequence motif png file"> |
| 153 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"]</filter> | 153 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"]</filter> |
| 154 </data> | 154 </data> |
| 155 | 155 |
| 156 <data name="str_motif_out_file" format="txt" from_work_dir="GraphProt.structure_motif" label="${tool.name} on ${on_string}: GraphProt structure motif text file"> | 156 <data name="str_motif_out_file" format="txt" from_work_dir="GraphProt.structure_motif" label="${tool.name} on ${on_string}: GraphProt structure motif text file"> |
| 157 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"]</filter> | 157 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"] and action_type["train_str_model"]</filter> |
| 158 </data> | 158 </data> |
| 159 | 159 |
| 160 <data name="str_motif_png_out_file" format="png" from_work_dir="GraphProt.structure_motif.png" label="${tool.name} on ${on_string}: GraphProt structure motif png file"> | 160 <data name="str_motif_png_out_file" format="png" from_work_dir="GraphProt.structure_motif.png" label="${tool.name} on ${on_string}: GraphProt structure motif png file"> |
| 161 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"] and action_type["train_str_model"]</filter> | 161 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"] and action_type["train_str_model"]</filter> |
| 162 </data> | 162 </data> |
| 191 | 191 |
| 192 </outputs> | 192 </outputs> |
| 193 | 193 |
| 194 <tests> | 194 <tests> |
| 195 | 195 |
| 196 <test expect_num_outputs="5"> | 196 <test expect_num_outputs="4"> |
| 197 <param name="action_type_selector" value="train"/> | 197 <param name="action_type_selector" value="train"/> |
| 198 <param name="pos_fasta_file" value="test_positives.train.fa" ftype="fasta"/> | 198 <param name="pos_fasta_file" value="test_positives.train.fa" ftype="fasta"/> |
| 199 <param name="neg_fasta_file" value="test_negatives.train.fa" ftype="fasta"/> | 199 <param name="neg_fasta_file" value="test_negatives.train.fa" ftype="fasta"/> |
| 200 <param name="hpo_mode_type_selector" value="supply"/> | 200 <param name="hpo_mode_type_selector" value="supply"/> |
| 201 <param name="pos_parop_fasta" value="test_positives.parop.fa" ftype="fasta"/> | 201 <param name="pos_parop_fasta" value="test_positives.parop.fa" ftype="fasta"/> |