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comparison data_manager/bowtie_index_builder.xml @ 1:39772beb6ef0 draft default tip

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author rnateam
date Tue, 10 Feb 2015 13:37:01 -0500
parents 07578a72b9b2
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0:07578a72b9b2 1:39772beb6ef0
1 <tool id="bowtie_index_builder_data_manager" name="Bowtie index" tool_type="manage_data" version="0.0.1"> 1 <tool id="bowtie_index_builder_data_manager" name="Bowtie index" tool_type="manage_data" version="0.0.1">
2 <description>builder</description> 2 <description>builder</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.0.0">bowtie</requirement> 4 <requirement type="package" version="0.12.7">bowtie</requirement>
5 </requirements> 5 </requirements>
6 <command interpreter="python">bowtie_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bowtie_indexes"</command> 6 <command interpreter="python">bowtie_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bowtie_indexes"</command>
7 <inputs> 7 <inputs>
8 <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> 8 <param name="all_fasta_source" type="select" label="Source FASTA Sequence">
9 <options from_data_table="all_fasta"/> 9 <options from_data_table="all_fasta"/>