diff tool_dependencies.xml @ 5:49b72f1013b3 draft

Uploaded

--- a/tool_dependencies.xml	Mon Oct 21 12:34:11 2013 -0400
+++ b/tool_dependencies.xml	Tue Oct 22 10:15:09 2013 -0400
@@ -14,6 +14,10 @@
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="move_file">
+                    <source>perf</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="move_file">
                     <source>blockclust.config</source>
                     <destination>$INSTALL_DIR/data/</destination>
                 </action>
@@ -32,6 +36,19 @@
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable name="BLOCKCLUST_DATA_PATH" action="prepend_to">$INSTALL_DIR/data</environment_variable>
                 </action>
+                <action type="setup_r_environment">
+                    <repository changeset_revision="e16e08f41ed7" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="R_3_0_1" version="3.0.1" />
+                    </repository>
+                    <repository changeset_revision="54195f1d4b0f" name="'package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="samtools" version="0.1.19 " />
+                    </repository>
+                    <r_package>http://cran.r-project.org/src/contrib/ggplot2_0.9.3.1.tar.gz</r_package>
+                    <r_package>http://cran.r-project.org/src/contrib/ape_3.0-11.tar.gz</r_package>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
+                </action>
             </actions>
         </install>
         <readme>